Reading in H5AD File from Human Cell Atlas
I am trying to import single-cell data from the human cell atlas (e.g, www.covid19cellatlas.org/#vento18-10x).
I want to use this files within Seurat, however – I keep getting this error:
> kidney <- ReadH5AD("documents/Datasets/Kidney/")
Error in H5File.open(filename, mode, file_create_pl, file_access_pl) :
HDF5-API Errors:
error #000: ../../src/hdf5-1.10.0-1/src/H5F.c in H5Fopen(): line 579: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: ../../src/hdf5-1.10.0-1/src/H5Fint.c in H5F_open(): line 1208: unable to read superblock
class: HDF5
major: File accessibilty
minor: Read failed
error #002: ../../src/hdf5-1.10.0-1/src/H5Fsuper.c in H5F__super_read(): line 271: unable to locate file signature
class: HDF5
major: File accessibilty
minor: Not an HDF5 file
error #003: ../../src/hdf5-1.10.0-1/src/H5FDint.c in H5FD_locate_signature(): line 124: unable to read file signature
class: HDF5
major: Low-level I/O
minor: Unable to initialize object
error #004: ../../src/hdf5-1.10.0-1/src/H5FDint.c in H5FD_read(): line 217: driver read request failed
class: HDF5
major: Virtual File Layer
minor: Read fai
Any ideas how to read in H5AD files? This has been pretty challenging for me to figure out.
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