Bioconductor – RTCGA.rnaseq

DOI: 10.18129/B9.bioc.RTCGA.rnaseq  

 

This package is for version 3.10 of Bioconductor;
for the stable, up-to-date release version, see
RTCGA.rnaseq.

Rna-seq datasets from The Cancer Genome Atlas Project

Bioconductor version: 3.10

Package provides rna-seq datasets from The Cancer Genome Atlas Project for all cohorts types from gdac.broadinstitute.org/. Rna-seq data format is explained here wiki.nci.nih.gov/display/TCGA/RNASeq+Version+2. Data source is illumina hiseq Level 3 RSEM normalized expression data. Data from 2015-11-01 snapshot.

Author: Marcin Kosinski <m.p.kosinski at gmail.com>

Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>

Citation (from within R,
enter citation("RTCGA.rnaseq")):

Installation

To install this package, start R (version
“3.6”) and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RTCGA.rnaseq")

For older versions of R, please refer to the appropriate
Bioconductor release.

Documentation

To view documentation for the version of this package installed
in your system, start R and enter:

browseVignettes("RTCGA.rnaseq")

 

HTML

R Script

Using RTCGA to download RNAseq data as included in RTCGA.rnaseq
PDF   Reference Manual
Text   NEWS

Details

Package Archives

Follow
Installation
instructions to use this
package in your R session.


Read more here: Source link