DOI: 10.18129/B9.bioc.RTCGA.rnaseq
This package is for version 3.10 of Bioconductor;
for the stable, up-to-date release version, see
RTCGA.rnaseq.
Rna-seq datasets from The Cancer Genome Atlas Project
Bioconductor version: 3.10
Package provides rna-seq datasets from The Cancer Genome Atlas Project for all cohorts types from gdac.broadinstitute.org/. Rna-seq data format is explained here wiki.nci.nih.gov/display/TCGA/RNASeq+Version+2. Data source is illumina hiseq Level 3 RSEM normalized expression data. Data from 2015-11-01 snapshot.
Author: Marcin Kosinski <m.p.kosinski at gmail.com>
Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>
Citation (from within R,
enter citation("RTCGA.rnaseq")
):
Installation
To install this package, start R (version
“3.6”) and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("RTCGA.rnaseq")
For older versions of R, please refer to the appropriate
Bioconductor release.
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("RTCGA.rnaseq")
Using RTCGA to download RNAseq data as included in RTCGA.rnaseq | ||
Reference Manual | ||
Text | NEWS |
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