Diamond blastx: does it support SLURM?
Hello,
I have a cluster composed by 7 nodes (20 threads), running on SLURM (Ubuntu 20.04). I am trying to run the diamond blastx process on the cluster, but it just runs N-times the same process …
Please, can someone tell me what I am missing?
Thank you
#!/bin/bash
#
#SBATCH --job-name=DiamondBlastx
#SBATCH --output=DiamondBlastx_%j.out
#SBATCH --error=DiamondBlastx_%j.err
#SBATCH --ntasks=20
threads=20
srun diamond blastx
-d /storage/RefSeq/refseq_protein_nonredund_diamond.dmnd
-p $threads
-q /storage/homehpc/emastriani/rRNACont/reads_not_rRNA.fq
-a blastx_diamond
-t $TMPDIR
-b 1.0
-k 1
-v
--log
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