but the results are quite different than I thought.
I thought that the results would be a little different since I used other tools to get my result, but
when you see some results
left one is my data and right one if from www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE63452 normalized data.
When you look at the A1BG gene, for example, there is huge difference between two data.
What can I do to fix this problem? It seems not reasonable to use same tools everytime I try to extract raw count from fastq.