How to compare two Seurat object (sample) in order to find top markers?

How to compare two Seurat object (sample) in order to find top markers?

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Hello,

I have merged two Seurat object, they are not technical replicate, in fact they are different sample types. I have done integration using IntegrateData function in Seurat4.

I have a question, how can I find top markers between two Seurat object, because they seems not really close even in phenotype, and worth to find their top markers.

I have put label for each sample and try to use group.by in FindMarkers but not worked.

Thanks.


scRNA-SEQ


NGS


rna-seq

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