NES using DESEQ2 – githubmemory

I was just wondering could you help with a query I have. I was following your vignette for bulk RNA-seq TF analysis and when I reached the part involving NES I wasn’t sure which column to use from my data. In the vignette you use the t column, coming from limma differential gene expression analysis, however I used DESEQ2 for my differential gene expression and don’t have a t column. Which column should I use instead? Is the ‘stat’ column the equivalent in DESEQ2?


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