Which of the following statements are true about the commands used…
in mothur during the process of generating contigs, filtering and merging the contigs and counting contigs?
Question 17 options:
The make.contigs command will extract the sequence and quality score data from your fastq files, create the reverse complement of the reverse read and then join the reads into contigs
The pcr.seqs command will filter the contigs established from the make.contigs command to only use the ones that look correct, e.g. under 275bps with zero ambiguous bases
The count.seqs command will merge the contigs that are identical and count the number of sequences for each unique type
The unique.seqs command will generate a table where the rows are the names of the unique sequence and the columns are the names of the groups and the data in the table is the number of times each unique sequence is identified for each group.
The make.contigs command requires contigs.files as input
Question 18 (5 points)
Which of the following is true about nano?
Question 18 options:
.sh tells us we are creating a shell script
nano is a text editor that can be used in Linux, MSDos and OSX.
nano Prok_genome_pipe.sh will create the file Prok_genome_pipe.sh if it does not already exist
nano Prok_genome_pipe.sh will run the file Prok_genome_pipe.sh if it already exists
CTRL-X tells nano you are finished editing
Question 19 (5 points)
Which of the following statements are true about PPIN?
Question 19 options:
Protein interaction pathways are limited to two proteins and explain how they bind, where in the cell they bind and when the proteins bind.
MS techniques can help us to map PPINs.
PPIN stands for protein-protein interconnected nodes
PPINs help us to understand how protein nodes work
Question 20 (5 points)
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