filter multiple VCF files using snpSift

filter multiple VCF files using snpSift

1

Hi,

I have several hundreds annonated VCF files (annotated using snpEff). I want to filter out all the low quality and low impact variants in all VCF files. Is there a way to  filter all files at one time, rather than filtering each file one by one ? I’m planning to use snpSift to filter out the low quality variants.. 


snpSift


filter


vcf

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