Tools / Packages to assess allele specific methylation?
Are there any tools/packages/pipelines to assess allele specific methylation for human data?
I have used the following methods:
1. TrimGalore > Bismark Alignment > SNPsplit (Read split)> Bismark (methylation call) or 2. TrimGalore > Bismark Alignment > Damefinder (Coverage/Meth on SNP)
But are other approaches available?
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