How to identify the cell type computationally when you have a list of conserved cell type markers for mouse genome (as discovered by Seurat)?

How to identify the cell type computationally when you have a list of conserved cell type markers for mouse genome (as discovered by Seurat)?

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I have a list of conserved cell type markers discovered from Seurat. I would like to annotate clusters with cell types based on that.

For example, here is a profile of cell type markers (from mouse genome) I am dealing with

Gm42418
Nme2
Rpl19
Malat1
AY036118
mt-Co3
mt-Nd2
Ahnak
Hnrnpu
mt-Atp6
mt-Atp8
mt-Nd5
Ly6g
Hist1h4d
Nedd4
mt-Nd1
Lars2
Xist
Prrc2c
Myof
mt-Nd4l
mt-Nd6
mt-Nd3
mt-Co1
Prpf4b
Hist1h1e
mt-Cytb
mt-Co2
mt-Nd4
Hist1h1b
Gm26917

how can I computationally predict the cell type if the genome is mouse mm10?


Seurat


scRNA-seq


cell_type


conserved_cell_type_markers

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2 hours ago by


mrj

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