How to identify the cell type computationally when you have a list of conserved cell type markers for mouse genome (as discovered by Seurat)?
I have a list of conserved cell type markers discovered from Seurat. I would like to annotate clusters with cell types based on that.
For example, here is a profile of cell type markers (from mouse genome) I am dealing with
Gm42418 Nme2 Rpl19 Malat1 AY036118 mt-Co3 mt-Nd2 Ahnak Hnrnpu mt-Atp6 mt-Atp8 mt-Nd5 Ly6g Hist1h4d Nedd4 mt-Nd1 Lars2 Xist Prrc2c Myof mt-Nd4l mt-Nd6 mt-Nd3 mt-Co1 Prpf4b Hist1h1e mt-Cytb mt-Co2 mt-Nd4 Hist1h1b Gm26917
how can I computationally predict the cell type if the genome is mouse mm10?
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