Converting *.con.tre into Newick format
Hi,
To infer duplication events on a gene tree given a species tree I’m using the Archaeopteryx package from Christian Zmasek. I would like to use a *.con.tre generated by MrBayes as a gene tree. Can someone explain to me how to convert this *.con.tre file into Newick format? (Without losing the posterior probability scores)
This is how the file looks like:
con.tre.file
• 5.7k views
Using TreeGraph2:
open nexus file with TreeGraph2, then: File – Export to tree format,
In the dialog box, choose format “newick”, and
choose “internal node names” : Hidden branch data with the ID “prob(percent)”
click export
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