Converting *.con.tre into Newick format

Converting *.con.tre into Newick format

1

Hi,

To infer duplication events on a gene tree given a species tree I’m using the Archaeopteryx package from Christian Zmasek. I would like to use a *.con.tre generated by MrBayes as a gene tree. Can someone explain to me how to convert this *.con.tre file into Newick format? (Without losing the posterior probability scores)

This is how the file looks like:
con.tre.file


MrBayes


Newick


Posterior probability


Convert

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updated 1 hour ago by

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written 5.5 years ago by

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20

Using TreeGraph2:

open nexus file with TreeGraph2, then: File – Export to tree format,

In the dialog box, choose format “newick”, and
choose “internal node names” : Hidden branch data with the ID “prob(percent)”

click export


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