RNAseq Viz

RNAseq Viz

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Hi All,

I’m really excited to have my first RNAseq expt. results back. However, I’m trying to find the best pipeline to work with in R that best matches my coding experience (little to none). I came across Searchlight2 which seems perfect as it is automated and will produce many figures that will allow me to visualize and interpret my data but, I’m already stuck on what to do in terms of installing Python, etc. Is there any way to get one-on-one help untilI I can get on my feet in R? Or, is there another current pipeline that folks are using that I can start learning from with a lower bar. I already have the .tsv file with the following headers in this order:

Feature_ID
entrezgene
external_gene_name
gene_biotype
external_gene_source
transcript_count
description
logFC
CI.L
CI.R
AveExpr
t
P.Value
adj.P.Val
B
linearFC

I have 2 groups each with 6 replicates

Thanks,
icodenow


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RNA-Seq

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