Phylum and Genus phyloseq
I have reads from microbiome that give me the phylum of several bacteria.
On the other hand I have reads that give me genus of the same bacteria.
Using phyloseq, how can I combine these 2 data set (merge doesn’t work) in order to have the relationship between phylum and Genus.
I want to construct a tree and give the beta and alpha diversity as well as jaccard index
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