DESeq2 R markdown plotting problem

DESeq2 R markdown plotting problem

0

Hello!

I’m working on my DESeq2 data analysis and I want to make a report with R Markdown. But I have a problem when I get to the deseq2 plotMA part.

In the markdown HTML I get a plot like this:

enter image description here

But when I run the SAME code in R I get a plot like this:

enter image description here

Any idea what could be the problem?


markdown


R


plot


deseq2

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