Sliding window plot using Python
I want to plot the number of positions in a sliding window of 1000 and a step of 20 for each sample (A-D).
Interpretation:
1
: position exists;NA
: position does not exist.
I have tested a dozen tools in bash
, R
and other but I am looking for a Python
solution.
Your advice please.
#This is an example of my data:
window = 1000
step = 20
# Example of dataframe
POSITION A B C D
1250 1 1 1 1
1750 NA 1 NA 1
1786 1 NA 1 1
1812 1 1 1 1
1855 1 1 1 1
1896 1 NA 1 NA
2635 NA 1 1 1
1689 1 1 NA NA
3250 1 1 1 1
3655 1 NA 1 1
3589 NA 1 1 1
I am looking for some thing like this:
Any help will be appreciated!
• 32 views
Read more here: Source link