Bioconductor – pasillaBamSubset

DOI: 10.18129/B9.bioc.pasillaBamSubset  

This package is for version 3.11 of Bioconductor;
for the stable, up-to-date release version, see
pasillaBamSubset.

Subset of BAM files from “Pasilla” experiment

Bioconductor version: 3.11

Subset of BAM files untreated1.bam (single-end reads) and untreated3.bam (paired-end reads) from “Pasilla” experiment (Pasilla knock-down by Brooks et al., Genome Research 2011). See the vignette in the pasilla data package for how BAM files untreated1.bam and untreated3.bam were obtained from the RNA-Seq read sequence data that is provided by NCBI Gene Expression Omnibus under accession numbers GSM461176 to GSM461181. Also contains the DNA sequence for fly chromosome 4 to which the reads can be mapped.

Author: Hervé Pagès

Maintainer: Hervé Pagès <hpages at fredhutch.org>

Installation

To install this package, start R (version
“4.0”) and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pasillaBamSubset")

For older versions of R, please refer to the appropriate
Bioconductor release.

Documentation

Details

Package Archives

Follow
Installation instructions to use this
package in your R session.