How to assemble a genome from scaffolds to Chromosome level
Hi,
I have got bacterial fastq files and I assembled these files in scaffolds using SPAdes. I am looking to assemble these scaffolds at the Chromosome level. Please let me know if there is any pipeline/software to do this. I tried to use ABACAS but I’m not sure if it is the correct way.
I would appreciate any suggestions.
Thank you!
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