DOI: 10.18129/B9.bioc.ggspavis
Visualization functions for spatially resolved transcriptomics data
Bioconductor version: Release (3.14)
Visualization functions for spatially resolved transcriptomics datasets stored in SpatialExperiment format. Includes functions to create several types of plots for data from from spot-based (e.g. 10x Genomics Visium) and molecule-based (e.g. seqFISH) technological platforms.
Author: Lukas M. Weber [aut, cre] 
, Helena L. Crowell [aut]
Maintainer: Lukas M. Weber <lukas.weber.edu at gmail.com>
Citation (from within R,
enter citation("ggspavis")):
Installation
To install this package, start R (version
“4.1”) and enter:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ggspavis")
For older versions of R, please refer to the appropriate
Bioconductor release.
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("ggspavis")
Details
| biocViews | SingleCell, Software, Transcriptomics |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.14 (R-4.1) ( |
| License | MIT + file LICENSE |
| Depends | ggplot2 |
| Imports | SpatialExperiment, SingleCellExperiment, SummarizedExperiment, ggside, grid, methods, stats |
| LinkingTo | |
| Suggests | BiocStyle, rmarkdown, knitr, STexampleData, BumpyMatrix, scater, scran, uwot, testthat (>= 3.0.0) |
| SystemRequirements | |
| Enhances | |
| URL | github.com/lmweber/ggspavis |
| BugReports | github.com/lmweber/ggspavis/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report |
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Installation instructions to use this
package in your R session.
Read more here: Source link
