Bioconductor – ggspavis

DOI: 10.18129/B9.bioc.ggspavis  

 

Visualization functions for spatially resolved transcriptomics data

Bioconductor version: Release (3.14)

Visualization functions for spatially resolved transcriptomics datasets stored in SpatialExperiment format. Includes functions to create several types of plots for data from from spot-based (e.g. 10x Genomics Visium) and molecule-based (e.g. seqFISH) technological platforms.

Author: Lukas M. Weber [aut, cre] , Helena L. Crowell [aut]

Maintainer: Lukas M. Weber <lukas.weber.edu at gmail.com>

Citation (from within R,
enter citation("ggspavis")):

Installation

To install this package, start R (version
“4.1”) and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ggspavis")

For older versions of R, please refer to the appropriate
Bioconductor release.

Documentation

To view documentation for the version of this package installed
in your system, start R and enter:

browseVignettes("ggspavis")

 

Details

biocViews SingleCell, Software, Transcriptomics
Version 1.0.0
In Bioconductor since BioC 3.14 (R-4.1) (
License MIT + file LICENSE
Depends ggplot2
Imports SpatialExperiment, SingleCellExperiment, SummarizedExperiment, ggside, grid, methods, stats
LinkingTo
Suggests BiocStyle, rmarkdown, knitr, STexampleData, BumpyMatrix, scater, scran, uwot, testthat (>= 3.0.0)
SystemRequirements
Enhances
URL github.com/lmweber/ggspavis
BugReports github.com/lmweber/ggspavis/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

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Installation
instructions to use this
package in your R session.


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