GO analyses background genes
I analysed three microarrays includes lncRNAs from GEO. These are same platforms. After I found differentially expressed lncRNAs, I performed lncRNA:miRNA analyses using DIANA web tool. Then, I found mRNAs related to miRNAs using mirDB, miRTarBase and TargetScan tools. I found to be 354 overlapped mRNAs with “mirDB”, “miRTarBase” and “TargetScan” databases.
According to these results, which background genes should I use in the GO analysis for the 354 overlapped mRNAs?
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