Posted in Research

DuplicateSetIterator

 October 29, 2021



DuplicateSetIterator


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  • java.lang.Object
    • htsjdk.samtools.DuplicateSetIterator



    • Method Summary



      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait



      • Methods inherited from interface java.util.Iterator

        forEachRemaining



    • Constructor Detail





      • DuplicateSetIterator

        public DuplicateSetIterator(CloseableIterator<SAMRecord> iterator,
                            SAMFileHeader header,
                            boolean preSorted)

        Allows the user of this iterator to skip the sorting of the input if the input is already sorted. If the records are said to be
        sorted but not actually sorted in the correct order, an exception during iteration will be thrown.



    • Method Detail







      • close

        public void close()
        Specified by:
        close in interface CloseableIterator<DuplicateSet>
        Specified by:
        close in interface java.io.Closeable
        Specified by:
        close in interface java.lang.AutoCloseable





      • remove

        public void remove()
        Specified by:
        remove in interface java.util.Iterator<DuplicateSet>



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