How to merge different VCF files

How to merge different VCF files

0

Hi everyone,

I have 2 different VCF files (v4.3) : one containing SNP and Indels and the other one containing CNVs. The latter has only the mandatory fields (CHROM, POS, ID, REF, ALT, QUAL, FILTER, INFO) while the former has also the field FORMAT and one reference genotype.

How can I merge these 2 VCF files?

Thanks in advance.


VCF

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