Hi!
I’ve been trying to install Reader of The Lost Arc (ROTLA) package from this github page (github.com/NIEHS/ROTLA). However, every time I try to run any command from this package, I always get the same error. It looks like that:
Traceback (most recent call last):
File "/home/yablinkubovich/.local/bin/ROTLA", line 11, in <module>
load_entry_point('ROTLA==0.1.0', 'console_scripts', 'ROTLA')()
File "/home/yablinkubovich/.local/lib/python2.7/site-packages/click-7.1.2-py2.7.egg/click/core.py", line 829, in __call__
return self.main(*args, **kwargs)
File "/home/yablinkubovich/.local/lib/python2.7/site-packages/click-7.1.2-py2.7.egg/click/core.py", line 782, in main
rv = self.invoke(ctx)
File "/home/yablinkubovich/.local/lib/python2.7/site-packages/click-7.1.2-py2.7.egg/click/core.py", line 1259, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/home/yablinkubovich/.local/lib/python2.7/site-packages/click-7.1.2-py2.7.egg/click/core.py", line 1066, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/home/yablinkubovich/.local/lib/python2.7/site-packages/click-7.1.2-py2.7.egg/click/core.py", line 610, in invoke
return callback(*args, **kwargs)
File "/home/yablinkubovich/.local/lib/python2.7/site-packages/ROTLA-0.1.0-py2.7.egg/ROTLA/cli.py", line 46, in find_breakpoints
_find_breakpoints(**args)
File "/home/yablinkubovich/.local/lib/python2.7/site-packages/ROTLA-0.1.0-py2.7.egg/ROTLA/ROTLA.py", line 39, in __init__
self.execute()
File "/home/yablinkubovich/.local/lib/python2.7/site-packages/ROTLA-0.1.0-py2.7.egg/ROTLA/ROTLA.py", line 408, in execute
call([self.blat_path, padded_fn, self.output_header + ".read_1.fasta", self.output_header + ".read_1.psl"], stdout=blat_out)
File "/usr/lib/python2.7/subprocess.py", line 172, in call
return Popen(*popenargs, **kwargs).wait()
File "/usr/lib/python2.7/subprocess.py", line 394, in __init__
errread, errwrite)
File "/usr/lib/python2.7/subprocess.py", line 1047, in _execute_child
raise child_exception
OSError: [Errno 2] No such file or directory
I’ve tried to reinstall it, or reinstall BLAT, which is required for this package, but nothing seems to work.
If anybody happened to work with this package before and faced the same problem, please, let me know how you solved it.
Read more here: Source link