STAR alignment error “expr: syntax error”

STAR alignment error “expr: syntax error”

0

Hello,

I am trying to use STAR aligner. The .err file has the following message:
“expr: syntax error”

The .out file is as follows:
Oct 28 00:12:06 ….. started STAR run
Oct 28 00:12:07 ….. loading genome
Oct 28 00:12:09 ….. started mapping
Oct 28 11:36:07 ….. finished mapping
Oct 28 11:36:07 ….. started sorting BAM
Oct 28 11:39:25 ….. finished successfully
All Done!

I only have 5% of the total reads aligned.
I would appreciate any suggestions to fix this issue. Thanks!


RNA-seq


STAR

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57 minutes ago by


mck

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