Genome assembly for identifying SNPs

Genome assembly for identifying SNPs

0

Hello there,

I’m a little confused on how to proceed – I want to identify if there are SNPs in my small RNA dataset. If I align using the top level genome assembly (Ensembl) with 0 mismatches, can I use SNP calling tools directly on the aligned bam files as this assembly includes hapoltypes ?


level


toplevel


primary


ensembl


snp

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