Bioconductor – biodbHmdb

DOI: 10.18129/B9.bioc.biodbHmdb  

 

biodbHmdb, a library for connecting to the HMDB Database

Bioconductor version: Release (3.14)

The biodbHmdb library is an extension of the biodb framework package that provides access to the HMDB Metabolites database. It allows to download the whole HMDB Metabolites database locally, access entries and search for entries by name or description. A future version of this package will also include a search by mass and mass spectra annotation.

Author: Pierrick Roger [aut, cre]

Maintainer: Pierrick Roger <pierrick.roger at cea.fr>

Citation (from within R,
enter citation("biodbHmdb")):

Installation

To install this package, start R (version
“4.1”) and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("biodbHmdb")

For older versions of R, please refer to the appropriate
Bioconductor release.

Documentation

To view documentation for the version of this package installed
in your system, start R and enter:

browseVignettes("biodbHmdb")

 

Details

biocViews DataImport, Infrastructure, Software
Version 1.0.0
In Bioconductor since BioC 3.14 (R-4.1) (
License AGPL-3
Depends R (>= 4.1)
Imports R6, biodb(>= 1.1.5), Rcpp
LinkingTo Rcpp, testthat
Suggests BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr, rmarkdown, covr, lgr
SystemRequirements
Enhances
URL github.com/pkrog/biodbHmdb
BugReports github.com/pkrog/biodbHmdb/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow
Installation
instructions to use this
package in your R session.


Read more here: Source link