DOI: 10.18129/B9.bioc.biodbHmdb
biodbHmdb, a library for connecting to the HMDB Database
Bioconductor version: Release (3.14)
The biodbHmdb library is an extension of the biodb framework package that provides access to the HMDB Metabolites database. It allows to download the whole HMDB Metabolites database locally, access entries and search for entries by name or description. A future version of this package will also include a search by mass and mass spectra annotation.
Author: Pierrick Roger [aut, cre]
Maintainer: Pierrick Roger <pierrick.roger at cea.fr>
Citation (from within R,
enter citation("biodbHmdb")
):
Installation
To install this package, start R (version
“4.1”) and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("biodbHmdb")
For older versions of R, please refer to the appropriate
Bioconductor release.
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("biodbHmdb")
Details
biocViews | DataImport, Infrastructure, Software |
Version | 1.0.0 |
In Bioconductor since | BioC 3.14 (R-4.1) ( |
License | AGPL-3 |
Depends | R (>= 4.1) |
Imports | R6, biodb(>= 1.1.5), Rcpp |
LinkingTo | Rcpp, testthat |
Suggests | BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr, rmarkdown, covr, lgr |
SystemRequirements | |
Enhances | |
URL | github.com/pkrog/biodbHmdb |
BugReports | github.com/pkrog/biodbHmdb/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Package Archives
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Installation instructions to use this
package in your R session.
Read more here: Source link