Mapping RNAseq counts to genomic loci

Mapping RNAseq counts to genomic loci

0

Hello.

I am trying to figure out a way to map count reads from RNAseq datafiles to genomic loci and display this data in an elegant way (ideally circos plots). However, most of the tools I have come across (edgeR, DEseq2) require a control sample and report differential gene expression. What I am looking for is a gene expression profile for bacteria that have sequenced transcriptomes to understand how gene expression varies across the genome. There is no “test” sample. Is there a tool that can assist in providing this information, given the sequenced genome and RNAseq counts? Thank you!


rnaseq


bacteria


transcriptomics

• 21 views

updated 1 hour ago by

8.3k

written 2 hours ago by

0

Read more here: Source link