filter Refseq file with bed? to produce coverage per gene

filter Refseq file with bed? to produce coverage per gene

0

Hi I am using GATK DepthOfCoverage -genelist mode to find the coverage per gene.
The output contains many 0 coverage for genes that are not in the panel.
Can I fix it by removing the genes that are not in the bed file ?
Could you suggest a way to do this please?

Thank you


coverage


bed


refseq

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2 hours ago by


whb

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