Bioconductor – goseq

 
 

This package is for version 2.10 of Bioconductor;
for the stable, up-to-date release version, see
goseq.

Gene Ontology analyser for RNA-seq and other length biased data

Bioconductor version: 2.10

Detects Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data

Author: Matthew Young

Maintainer: Matthew Young <myoung at wehi.edu.au>

Citation (from within R,
enter citation("goseq")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("goseq")

Documentation

To view documentation for the version of this package installed
in your system, start R and enter:

browseVignettes("goseq")

 

PDF

goseq User’s Guide
PDF   Reference Manual

Details

biocViews GO, GeneExpression, HighThroughputSequencingData, RNAseq, Software, Transcription
Version 1.8.0
In Bioconductor since BioC 2.6 (R-2.11) (6 years)
License LGPL (>= 2)
Depends R (>= 2.11.0), BiasedUrn, geneLenDataBase
Imports mgcv, graphics, stats, utils, AnnotationDbi
LinkingTo
Suggests GO.db, edgeR, org.Hs.eg.db
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me oneChannelGUI
Build Report  

Package Archives

Follow
Installation
instructions to use this
package in your R session.


Read more here: Source link