How to use output from GeneMark-ES to identify function?

How to use output from GeneMark-ES to identify function?

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Hello everyone,

I would like to ask anyone who know about How to use result from GeneMark-ES program to identify function?
For now I already have a result like below of this post. And It’s include Nucleotide sequences output but I would like to use Amino acid sequences to identify function. That’s the problem that I would like to ask suggestion by anyone who know to solve this problem. I cannot translate those Nucleotide sequence to Amino acid sequence because It’s still include intron when just translate Nucleotide sequence to Amino acid sequence.

Output from GeneMark-ES :
*Eukariotyc GeneMark.hmm version 3.49
Sequence name: /storage/home/nuthatai.sut/CallORF_Tool/gm_et_linux_64/gmes_petap/output/data/dna.fa_15
FASTA defline: >dna.fa_15 15_dna 1 30316
Sequence length: 30316 bp
G+C content: 27.92%
Matrices file: /storage/home/nuthatai.sut/CallORF_Tool/gm_et_linux_64/gmes_petap/output/gmhmm.mod
Tue Oct 25 17:52:02 2016
Predicted genes/exons
Gene Exon Strand Exon Exon Range Exon Start/End
# # Type Length Frame
1 2 – Terminal 6981 7014 34 3 3 – –
1 1 – Initial 7171 7244 74 2 1 – –
2 2 – Terminal 16420 16424 5 3 2 – –
2 1 – Initial 16476 16509 34 1 1 – –
3 1 + Initial 26431 26436 6 1 3 – –
3 2 + Terminal 26642 26644 3 1 3 – –

gene_1|GeneMark.hmm|108_nt
ATGTCATCCCTTACTTTGCATCAACAGGCCTACTACACGATAGCACCCGCCGGAATGTCC
ATTTGGACTGAACGTAAGAAAGGCGACGTCATGACCAAGACAGTATAA
gene_2|GeneMark.hmm|39_nt
ATGTTTCTACCAAACATCGGATTTAACTCACCAGGATGA
gene_3|GeneMark.hmm|9_nt
ATGAATTGA

Thank you for advance everyone


GeneMark-es


annotation

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