Annotation of vcftools fst output using GTF or GFF

Annotation of vcftools fst output using GTF or GFF

1

hi everyone

I have an outputted file from vcftools for fst calculation in the following format

CHROM   BIN_START   BIN_END N_VARIANTS  WEIGHTED_FST    MEAN_FST
ch1 1   40000   75  0.0516003   0.0355082
ch1 20001   60000   22  -0.00980986 -0.0205035
ch1 40001   80000   46  0.0180676   0.0236424
ch1 60001   100000  72  0.0273771   0.0317944

how can I annotate this file using GTF or GFF file? My goal is to identify possible overlapping genes with detected windows.

Thanks in advance for your help


fst


vcftools


annotation


GTF

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