Annotation of vcftools fst output using GTF or GFF
hi everyone
I have an outputted file from vcftools for fst calculation in the following format
CHROM BIN_START BIN_END N_VARIANTS WEIGHTED_FST MEAN_FST
ch1 1 40000 75 0.0516003 0.0355082
ch1 20001 60000 22 -0.00980986 -0.0205035
ch1 40001 80000 46 0.0180676 0.0236424
ch1 60001 100000 72 0.0273771 0.0317944
how can I annotate this file using GTF or GFF file? My goal is to identify possible overlapping genes with detected windows.
Thanks in advance for your help
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