Bioconductor – ChromHeatMap

DOI: 10.18129/B9.bioc.ChromHeatMap  

 

Heat map plotting by genome coordinate

Bioconductor version: Release (3.5)

The ChromHeatMap package can be used to plot genome-wide data (e.g. expression, CGH, SNP) along each strand of a given chromosome as a heat map. The generated heat map can be used to interactively identify probes and genes of interest.

Author: Tim F. Rayner

Maintainer: Tim F. Rayner <tfrayner at gmail.com>

Citation (from within R,
enter citation("ChromHeatMap")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChromHeatMap")

Documentation

To view documentation for the version of this package installed
in your system, start R and enter:

browseVignettes("ChromHeatMap")

 

PDF

R Script

Plotting expression data with ChromHeatMap
PDF   Reference Manual

Details

biocViews Software, Visualization
Version 1.30.0
In Bioconductor since BioC 2.5 (R-2.10) (8 years)
License Artistic-2.0
Depends R (>= 2.9.0), BiocGenerics(>= 0.3.2), annotate(>= 1.20.0), AnnotationDbi(>= 1.4.0)
Imports Biobase(>= 2.17.8), graphics, grDevices, methods, stats, IRanges, rtracklayer, GenomicRanges
LinkingTo
Suggests ALL, hgu95av2.db
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

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Installation
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