DOI: 10.18129/B9.bioc.ChromHeatMap
Heat map plotting by genome coordinate
Bioconductor version: Release (3.5)
The ChromHeatMap package can be used to plot genome-wide data (e.g. expression, CGH, SNP) along each strand of a given chromosome as a heat map. The generated heat map can be used to interactively identify probes and genes of interest.
Author: Tim F. Rayner
Maintainer: Tim F. Rayner <tfrayner at gmail.com>
Citation (from within R,
enter citation("ChromHeatMap")
):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("ChromHeatMap")
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("ChromHeatMap")
Plotting expression data with ChromHeatMap | ||
Reference Manual |
Details
biocViews | Software, Visualization |
Version | 1.30.0 |
In Bioconductor since | BioC 2.5 (R-2.10) (8 years) |
License | Artistic-2.0 |
Depends | R (>= 2.9.0), BiocGenerics(>= 0.3.2), annotate(>= 1.20.0), AnnotationDbi(>= 1.4.0) |
Imports | Biobase(>= 2.17.8), graphics, grDevices, methods, stats, IRanges, rtracklayer, GenomicRanges |
LinkingTo | |
Suggests | ALL, hgu95av2.db |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Package Archives
Follow
Installation instructions to use this
package in your R session.
Read more here: Source link