This package is for version 3.12 of Bioconductor;
for the stable, up-to-date release version, see
CAMERA.
Collection of annotation related methods for mass spectrometry data
Bioconductor version: 3.12
Annotation of peaklists generated by xcms, rule based annotation of isotopes and adducts, isotope validation, EIC correlation based tagging of unknown adducts and fragments
Author: Carsten Kuhl, Ralf Tautenhahn, Hendrik Treutler, Steffen Neumann {ckuhl|htreutle|sneumann}@ipb-halle.de, rtautenh@scripps.edu
Maintainer: Steffen Neumann <sneumann at ipb-halle.de>
Citation (from within R,
enter citation("CAMERA")
):
Installation
To install this package, start R (version
“4.0”) and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("CAMERA")
For older versions of R, please refer to the appropriate
Bioconductor release.
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("CAMERA")
Atom count expectations with compoundQuantiles | ||
Isotope pattern validation with CAMERA | ||
Molecule Identification with CAMERA | ||
Reference Manual | ||
Text | NEWS |
Details
biocViews | ImmunoOncology, MassSpectrometry, Metabolomics, Software |
Version | 1.46.0 |
In Bioconductor since | BioC 2.4 (R-2.9) (12 years) |
License | GPL (>= 2) |
Depends | R (>= 2.1.0), methods, Biobase, xcms(>= 1.13.5) |
Imports | methods, xcms, RBGL, graph, graphics, grDevices, stats, utils, Hmisc, igraph |
LinkingTo | |
Suggests | faahKO, RUnit, BiocGenerics |
SystemRequirements | |
Enhances | Rmpi, snow |
URL | msbi.ipb-halle.de/msbi/CAMERA/ |
BugReports | github.com/sneumann/CAMERA/issues/new |
Depends On Me | flagme, IPO, LOBSTAHS, MAIT, metaMS, PtH2O2lipids |
Imports Me | |
Suggests Me | cliqueMS, msPurity, mtbls2, RMassBank |
Links To Me | |
Build Report |
Package Archives
Follow
Installation instructions to use this
package in your R session.
Read more here: Source link