Bioconductor – CAMERA

DOI: 10.18129/B9.bioc.CAMERA  

 

This package is for version 3.12 of Bioconductor;
for the stable, up-to-date release version, see
CAMERA.

Collection of annotation related methods for mass spectrometry data

Bioconductor version: 3.12

Annotation of peaklists generated by xcms, rule based annotation of isotopes and adducts, isotope validation, EIC correlation based tagging of unknown adducts and fragments

Author: Carsten Kuhl, Ralf Tautenhahn, Hendrik Treutler, Steffen Neumann {ckuhl|htreutle|sneumann}@ipb-halle.de, rtautenh@scripps.edu

Maintainer: Steffen Neumann <sneumann at ipb-halle.de>

Citation (from within R,
enter citation("CAMERA")):

Installation

To install this package, start R (version
“4.0”) and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CAMERA")

For older versions of R, please refer to the appropriate
Bioconductor release.

Documentation

To view documentation for the version of this package installed
in your system, start R and enter:

browseVignettes("CAMERA")

 

PDF

Atom count expectations with compoundQuantiles

PDF

Isotope pattern validation with CAMERA

PDF

R Script

Molecule Identification with CAMERA
PDF   Reference Manual
Text   NEWS

Details

biocViews ImmunoOncology, MassSpectrometry, Metabolomics, Software
Version 1.46.0
In Bioconductor since BioC 2.4 (R-2.9) (12 years)
License GPL (>= 2)
Depends R (>= 2.1.0), methods, Biobase, xcms(>= 1.13.5)
Imports methods, xcms, RBGL, graph, graphics, grDevices, stats, utils, Hmisc, igraph
LinkingTo
Suggests faahKO, RUnit, BiocGenerics
SystemRequirements
Enhances Rmpi, snow
URL msbi.ipb-halle.de/msbi/CAMERA/
BugReports github.com/sneumann/CAMERA/issues/new
Depends On Me flagme, IPO, LOBSTAHS, MAIT, metaMS, PtH2O2lipids
Imports Me
Suggests Me cliqueMS, msPurity, mtbls2, RMassBank
Links To Me
Build Report  

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package in your R session.


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