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This package is for version 3.2 of Bioconductor;
for the stable, up-to-date release version, see
csaw.
ChIP-seq analysis with windows
Bioconductor version: 3.2
Detection of differentially bound regions in ChIP-seq data with sliding windows, with methods for normalization and proper FDR control.
Author: Aaron Lun <alun at wehi.edu.au>, Gordon Smyth <smyth at wehi.edu.au>
Maintainer: Aaron Lun <alun at wehi.edu.au>
Citation (from within R,
enter citation("csaw")
):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("csaw")
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("csaw")
csaw Vignette | ||
csawUserGuide.pdf | ||
Reference Manual | ||
Text | NEWS |
Details
biocViews | Annotation, ChIPSeq, Coverage, Genetics, MultipleComparison, Normalization, Sequencing, Software |
Version | 1.4.1 |
In Bioconductor since | BioC 3.0 (R-3.1) (1.5 years) |
License | GPL-3 |
Depends | R (>= 3.2.0), GenomicRanges, SummarizedExperiment |
Imports | Rsamtools, edgeR, limma, GenomicFeatures, AnnotationDbi, methods, GenomicAlignments, S4Vectors, IRanges, GenomeInfoDb |
LinkingTo | |
Suggests | org.Mm.eg.db, TxDb.Mmusculus.UCSC.mm10.knownGene |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | diffHic |
Suggests Me | |
Build Report |
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Read more here: Source link