Convertion Of Gff3 To Gtf

Convertion Of Gff3 To Gtf

3

How do I convert GFF file to a GTF file? Is there any tool available?


gtf


gff

• 79k views

The easiest way is to use the gffread program that comes with the Cufflinks software suite (Tuxedo)

gffread my.gff3 -T -o my.gtf

See gffread -h for more information

updated 3 months ago by

35k

written 7.9 years ago by

▴

520

Take a look at the rtracklayer Bioconducor package:

?import.gff3
test_path <- system.file("tests", package = "rtracklayer")
test_gff3 <- file.path(test_path, "genes.gff3")
test <- import(test_gff3)
export(test,"test.gtf","gtf")

updated 3 months ago by

35k

written 9.5 years ago by

&utrif;

270

I made a mini review of existing tools. See here.


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