htseq-count Error ‘_StepVector_Iterator_obj’ object has no attribute ‘next’

htseq-count Error ‘_StepVector_Iterator_obj’ object has no attribute ‘next’

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I am trying to run htseq-count (v. 0.13.5) on a sorted and indexed bam file. The command I entered looks like this:

htseq-count -f bam -r pos -s yes -t CDS -i gene_id -m union filename_sorted.bam filename.gtf

I get the following error from htseq-count:

'_StepVector_Iterator_obj' object has no attribute 'next'
  [Exception type: AttributeError, raised in StepVector.py:409]

Does anyone know the cause of this error? I have played around with other alignment file input formats (unsorted bam, sam, etc.), but I keep getting the same error.


htseq-count

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