Dragen-gatk for trio
Hi everyone,
the Dragen gatk pipeline works great for single sample. however I would like to know if any have used this pipeline for a trio? if so how did you do it? it is recommended to do a hard filtering based on QUAL but how to get a multisample vcf in which the bad quality variants (QUAL <10.43) have been removed?
Thanks in advance,
Quentin.
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