Fail to install Ensembl VEP
I have been encounter some issues on installing the Ensembl VEP.
I am using Ubuntu 20.04 system, with the newest perl v5.34.
perl -MBio::Root::Version -e 'print $Bio::Root::Version::VERSION,"n"' 1.006924
However, when I install the VEP, it failed.
Hello! This installer is configured to install v105 of the Ensembl API for use by the VEP. It will not affect any existing installations of the Ensembl API that you may have. It will also download and install cache files from Ensembl's FTP server. Checking for installed versions of the Ensembl API...done It looks like you already have v105 of the API installed. You shouldn't need to install the API Skip to the next step (n) to install cache files Do you want to continue installing the API (y/n)? y Setting up directories Destination directory ./Bio already exists. Do you want to overwrite it (if updating VEP this is probably OK) (y/n)? y - fetching BioPerl - unpacking ./Bio/tmp/release-1-6-924.zip - moving files Attempting to install Bio::DB::HTS and htslib. >>> If this fails, try re-running with --NO_HTSLIB - checking out HTSLib fatal: destination path 'htslib' already exists and is not an empty directory. - building HTSLIB in ./htslib In /media/robunken/8357fc75-8d32-4c98-82d6-6a8a8b14511d/ab/ensembl-vep-release-105/htslib make: Nothing to be done for 'all'. - unpacking ./Bio/tmp/biodbhts.zip to ./Bio/tmp/ ./Bio/tmp/Bio-DB-HTS-2.11 - moving files to ./biodbhts - making Bio::DB:HTS Can't exec "/tmp/build/80754af9/perl_1527832170752/_build_env/bin/x86_64-conda_cos6-linux-gnu-gcc": No such file or directory at /home/robunken/miniconda3/lib/site_perl/5.26.2/ExtUtils/CBuilder/Base.pm line 343. Warning: ExtUtils::CBuilder not installed or no compiler detected Proceeding with configuration, but compilation may fail during Build Checking prerequisites... requires: ! Bio::Root::Version is not installed ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions of the modules indicated above before proceeding with this installation Run 'Build installdeps' to install missing prerequisites. Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Bio-DB-HTS' version '2.11' Building Bio-DB-HTS Error: no compiler detected to compile 'lib/Bio/DB/HTS.c'. Aborting ERROR: Shared Bio::DB:HTS library not found
Any idea will be appreciated.
Thanks in advance,
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