Bioconductor – pRolocGUI

 
 

This package is for version 3.4 of Bioconductor;
for the stable, up-to-date release version, see
pRolocGUI.

Interactive visualisation of spatial proteomics data

Bioconductor version: 3.4

The package pRolocGUI comprises functions to interactively visualise organelle (spatial) proteomics data on the basis of pRoloc, pRolocdata and shiny.

Author: Lisa M Breckels, Thomas Naake and Laurent Gatto

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>, Lisa M Breckels <lms79 at cam.ac.uk>

Citation (from within R,
enter citation("pRolocGUI")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pRolocGUI")

Documentation

HTML

R Script

pRolocGUI – Interactive visualisation of spatial proteomics data
PDF   Reference Manual
Text   NEWS
Video   pRoloc, pRolocdata and pRolocGUI

Details

biocViews GUI, Proteomics, Software, Visualization
Version 1.8.2
In Bioconductor since BioC 3.0 (R-3.1) (2.5 years)
License GPL-2
Depends methods, R (>= 3.1.0), pRoloc(>= 1.11.1), Biobase, MSnbase(>= 1.13.11)
Imports shiny (>= 0.9.1), scales, dplyr, DT (>= 0.1.40), graphics, utils
LinkingTo
Suggests pRolocdata, knitr, BiocStyle, rmarkdown
SystemRequirements
Enhances
URL ComputationalProteomicsUnit.github.io/pRolocGUI/
BugReports github.com/ComputationalProteomicsUnit/pRolocGUI/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

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Installation
instructions to use this
package in your R session.


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