This page was generated on 2017-04-15 16:09:39 -0400 (Sat, 15 Apr 2017).
GGBase 3.36.0 VJ Carey
|
malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ WARNINGS ] | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | ||||||
morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | WARNINGS | OK |
Summary
Package: GGBase |
Version: 3.36.0 |
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check –no-vignettes –timings GGBase_3.36.0.tar.gz |
StartedAt: 2017-04-14 22:53:17 -0400 (Fri, 14 Apr 2017) |
EndedAt: 2017-04-14 22:55:55 -0400 (Fri, 14 Apr 2017) |
EllapsedTime: 158.4 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: GGBase.Rcheck |
Warnings: 1 |
Command output
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings GGBase_3.36.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.4-bioc/meat/GGBase.Rcheck’ * using R version 3.3.3 (2017-03-06) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘GGBase/DESCRIPTION’ ... OK * this is package ‘GGBase’ version ‘3.36.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘GGBase’ can be installed ... WARNING Found the following significant warnings: Warning: replacing previous import ‘IRanges::which’ by ‘Matrix::which’ when loading ‘GGBase’ See ‘/home/biocbuild/bbs-3.4-bioc/meat/GGBase.Rcheck/00install.out’ for details. * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to ‘snpStats’ which was already attached by Depends. Please remove these calls from your code. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE getSS: no visible global function definition for ‘installed.packages’ Undefined global functions or variables: installed.packages Consider adding importFrom("utils", "installed.packages") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘MAFfilter.R’ Running ‘make.R’ Running ‘plot_EvG.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 3 NOTEs See ‘/home/biocbuild/bbs-3.4-bioc/meat/GGBase.Rcheck/00check.log’ for details.
GGBase.Rcheck/00install.out:
* installing *source* package ‘GGBase’ ... ** R ** inst ** preparing package for lazy loading Warning: replacing previous import ‘IRanges::which’ by ‘Matrix::which’ when loading ‘GGBase’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded Warning: replacing previous import ‘IRanges::which’ by ‘Matrix::which’ when loading ‘GGBase’ * DONE (GGBase)
GGBase.Rcheck/GGBase-Ex.timings:
name | user | system | elapsed | |
MAFfilter | 3.428 | 0.056 | 3.532 | |
clipPCs | 0.000 | 0.000 | 0.001 | |
externalize | 0.000 | 0.000 | 0.001 | |
make_smlSet | 3.124 | 0.036 | 3.162 | |
plot_EvG | 3.192 | 0.028 | 3.220 | |
rsid-class | 0.004 | 0.000 | 0.001 | |
smlSet-class | 0.000 | 0.000 | 0.001 | |
Read more here: Source link