DOI: 10.18129/B9.bioc.mirTarRnaSeq
mirTarRnaSeq
Bioconductor version: Release (3.14)
mirTarRnaSeq R package can be used for interactive mRNA miRNA sequencing statistical analysis. This package utilizes expression or differential expression mRNA and miRNA sequencing results and performs interactive correlation and various GLMs (Regular GLM, Multivariate GLM, and Interaction GLMs ) analysis between mRNA and miRNA expriments. These experiments can be time point experiments, and or condition expriments.
Author: Mercedeh Movassagh [aut, cre] , Sarah Morton [aut], Rafael Irizarry [aut], Jeffrey Bailey [aut], Joseph N Paulson [aut]
Maintainer: Mercedeh Movassagh <mercedeh at ds.dfci.harvard.edu>
Citation (from within R,
enter citation("mirTarRnaSeq")
):
Installation
To install this package, start R (version
“4.1”) and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("mirTarRnaSeq")
For older versions of R, please refer to the appropriate
Bioconductor release.
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("mirTarRnaSeq")
Details
biocViews | DifferentialExpression, Regression, Sequencing, SmallRNA, Software, TimeCourse, miRNA |
Version | 1.2.0 |
In Bioconductor since | BioC 3.13 (R-4.1) (1 year) |
License | MIT |
Depends | R (>= 4.1.0) |
Imports | purrr, MASS, pscl, assertthat, caTools, dplyr, pheatmap, reshape2, corrplot, grDevices, graphics, stats, utils, data.table, R.utils |
LinkingTo | |
Suggests | BiocStyle, knitr, rmarkdown, R.cache |
SystemRequirements | |
Enhances | |
URL | |
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Imports Me | |
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Build Report |
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Installation instructions to use this
package in your R session.
Read more here: Source link