Bioconductor – mirTarRnaSeq

DOI: 10.18129/B9.bioc.mirTarRnaSeq  

 

mirTarRnaSeq

Bioconductor version: Release (3.14)

mirTarRnaSeq R package can be used for interactive mRNA miRNA sequencing statistical analysis. This package utilizes expression or differential expression mRNA and miRNA sequencing results and performs interactive correlation and various GLMs (Regular GLM, Multivariate GLM, and Interaction GLMs ) analysis between mRNA and miRNA expriments. These experiments can be time point experiments, and or condition expriments.

Author: Mercedeh Movassagh [aut, cre] , Sarah Morton [aut], Rafael Irizarry [aut], Jeffrey Bailey [aut], Joseph N Paulson [aut]

Maintainer: Mercedeh Movassagh <mercedeh at ds.dfci.harvard.edu>

Citation (from within R,
enter citation("mirTarRnaSeq")):

Installation

To install this package, start R (version
“4.1”) and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mirTarRnaSeq")

For older versions of R, please refer to the appropriate
Bioconductor release.

Documentation

To view documentation for the version of this package installed
in your system, start R and enter:

browseVignettes("mirTarRnaSeq")

 

Details

biocViews DifferentialExpression, Regression, Sequencing, SmallRNA, Software, TimeCourse, miRNA
Version 1.2.0
In Bioconductor since BioC 3.13 (R-4.1) (1 year)
License MIT
Depends R (>= 4.1.0)
Imports purrr, MASS, pscl, assertthat, caTools, dplyr, pheatmap, reshape2, corrplot, grDevices, graphics, stats, utils, data.table, R.utils
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, R.cache
SystemRequirements
Enhances
URL
Depends On Me
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Build Report  

Package Archives

Follow
Installation
instructions to use this
package in your R session.


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