Summary:
This Pathway/Genome Database (PGDB) was generated on 27-May-2018 from the annotated genome of Fusobacterium nucleatum MJR7757B, as obtained from RefSeq (annotation date: 04-APR-2017). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 22.0)
[Karp16,
Karp11] using MetaCyc version 22.0
[Caspi18]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutess of Health.
Taxonomic Lineage:
cellular organisms,
Bacteria <bacteria>,
Fusobacteria <Fusobacteria>,
Fusobacteriia,
Fusobacteriales,
Fusobacteriaceae,
Fusobacterium,
Fusobacterium nucleatum
Unification Links:
BIOSAMPLE:SAMN03851012,
NCBI BioProject:PRJNA224116,
NCBI-Taxonomy:851
Organism or Sample Properties | |
Environment: | Vagina |
Host: | Homo sapiens |
Human Microbiome Body Site: | urogenital-tract |
Genes: | 2,391 | ||
Pathways: | 124 | ||
Enzymatic Reactions: | 822 | ||
Transport Reactions: | 52 | ||
Polypeptides: | 2,151 | ||
Protein Complexes: | 23 | ||
Enzymes: | 495 | ||
Transporters: | 216 | ||
Compounds: | 620 | ||
Transcription Units: | 1,200 | ||
tRNAs: | 9 | ||
Protein Features: | 2,490 | ||
GO Terms: | 10,340 |
Genetic Code Number:
11 — Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
PGDB Unique ID:
1PPE
References
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Page generated by Pathway Tools version 26.0 (software by SRI International) on Sat Apr 23, 2022, BIOCYC17B.
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