Transcription Start Site
What are the best databases to check out the transcription start sites of specific genes in human genome?
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wget -q -O - "http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/wgEncodeGencodeBasicV19.txt.gz" | gunzip -c | awk '(int($7)< int($8)) {if($4=="+") {printf("%s\t%d\t%d\t%s\t%s\n",$3,$7,int($7)+1,$2,$4);}else {printf("%s\t%d\t%d\t%s\t%s\n",$3,int($8)-3,$8,$2,$4);}}'
chr1 69090 69091 ENST00000335137.3 +
chr1 139306 139309 ENST00000423372.3 -
chr1 367658 367659 ENST00000426406.1 +
chr1 622031 622034 ENST00000332831.2 -
chr1 739134 739137 ENST00000599533.1 -
chr1 818042 818043 ENST00000594233.1 +
chr1 861321 861322 ENST00000342066.3 +
chr1 866442 866445 ENST00000598827.1 -
chr1 894617 894620 ENST00000327044.6 -
chr1 896073 896074 ENST00000338591.3 +
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