Finding DEGs from HISAT2/STRINGTIE output

Finding DEGs from HISAT2/STRINGTIE output

0

Hello,
I have to search for DEGs from four samples of crop. I am following reference based mapping of reads to genome using HISAT2. I have completed till the generation of merged .gtf files for the samples using STRINGTIE. Since I am new to RNA seq analysis, I am not able to go forward and do counting and eventually find the DEGs.
I hope you will help me.

Thank you

Anupama


EdgeR


pipeline


BowTie


Kallisto


RSem


DEGs

• 134 views

Read more here: Source link