Finding DEGs from HISAT2/STRINGTIE output
Hello,
I have to search for DEGs from four samples of crop. I am following reference based mapping of reads to genome using HISAT2. I have completed till the generation of merged .gtf files for the samples using STRINGTIE. Since I am new to RNA seq analysis, I am not able to go forward and do counting and eventually find the DEGs.
I hope you will help me.
Thank you
Anupama
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