Bioconductor – ComplexHeatmap

DOI: 10.18129/B9.bioc.ComplexHeatmap  

 

This package is for version 3.14 of Bioconductor;
for the stable, up-to-date release version, see
ComplexHeatmap.

Make Complex Heatmaps

Bioconductor version: 3.14

Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential patterns. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports various annotation graphics.

Author: Zuguang Gu

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R,
enter citation("ComplexHeatmap")):

Installation

To install this package, start R (version
“4.1”) and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ComplexHeatmap")

For older versions of R, please refer to the appropriate
Bioconductor release.

Documentation

To view documentation for the version of this package installed
in your system, start R and enter:

browseVignettes("ComplexHeatmap")

 

Details

biocViews Sequencing, Software, Visualization
Version 2.10.0
In Bioconductor since BioC 3.1 (R-3.2) (7 years)
License MIT + file LICENSE
Depends R (>= 3.5.0), methods, grid, graphics, stats, grDevices
Imports circlize (>= 0.4.5), GetoptLong, colorspace, clue, RColorBrewer, GlobalOptions (>= 0.1.0), png, digest, IRanges, matrixStats, foreach, doParallel
LinkingTo
Suggests testthat (>= 1.0.0), knitr, markdown, dendsort, jpeg, tiff, fastcluster, EnrichedHeatmap, dendextend (>= 1.0.1), grImport, grImport2, glue, GenomicRanges, gridtext, pheatmap (>= 1.0.12), gridGraphics, gplots, rmarkdown, Cairo
SystemRequirements
Enhances
URL github.com/jokergoo/ComplexHeatmap jokergoo.github.io/ComplexHeatmap-reference/book/
Depends On Me AMARETTO, EnrichedHeatmap, recoup
Imports Me airpart, BiocOncoTK, BioNERO, blacksheepr, BloodGen3Module, CATALYST, celda, CeTF, COCOA, cola, cytoKernel, DEComplexDisease, DEGreport, DEP, diffcyt, diffUTR, ELMER, fCCAC, gCrisprTools, GeneTonic, GenomicSuperSignature, gmoviz, InteractiveComplexHeatmap, InterCellar, iSEE, LineagePulse, MatrixQCvis, MesKit, microbiomeMarker, MOMA, monaLisa, muscat, musicatk, MWASTools, PathoStat, PeacoQC, pipeComp, POMA, profileplyr, RLSeq, sechm, segmenter, SEtools, simplifyEnrichment, singleCellTK, sparrow, TBSignatureProfiler, TCGAWorkflow, Xeva, YAPSA
Suggests Me ALPS, artMS, bambu, BindingSiteFinder, BrainSABER, clustifyr, CNVRanger, dittoSeq, EnrichmentBrowser, gtrellis, HilbertCurve, msImpute, NanoporeRNASeq, plotgardener, projectR, QFeatures, scDblFinder, spiky, TCGAbiolinks, TCGAutils, TimeSeriesExperiment, weitrix
Links To Me
Build Report  

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