Authors:
Peter D. Karp1,
Ingrid Keseler1,
Carol Fulcher1,
Anamika Kothari1,
Suzanne Paley1,
Markus Krummenacker1,
Ian Paulsen2,
Amanda Mackie2,
Julio Collado-Vides3,
Cesar Bonavides-Martinez3,
Socorro Gama-Castro3,
Alberto Santos-Zavaleta3,
Victor H Tierrafria3
1SRI International,
2Macquarie University,
3Centro de Ciencias Genomicas, Universidad Nacional Autonoma de Mexico
Summary:
EcoCyc is a model-organism database for Escherichia coli K-12 MG1655. For more information, see URL EcoCyc.org.
Citations:
[Keseler21]
Taxonomic Lineage:
cellular organisms,
Bacteria <bacteria>,
Proteobacteria,
Gammaproteobacteria,
Enterobacterales,
Enterobacteriaceae,
Escherichia,
Escherichia coli,
Escherichia coli K-12,
Escherichia coli K-12 substr. MG1655
Unification Links:
GOLD:0072557,
NCBI-Taxonomy:511145
| Organism or Sample Properties | |
| Relationship to Oxygen: | facultative |
| Temperature Range: | mesophile |
| NCBI Genome Type: | reference |
| Replicon | Total Genes | Protein Genes | RNA Genes | Pseudogenes | Size (bp) | NCBI Link |
| Chromosome | 4,691 | 4,326 | 219 | 146 | 4,641,652 | NCBI-GenBank:U00096.3 |
| Genes without a physical map position: | 2 |
| Genes: | 4,736 | ||
| Pathways: | 364 | ||
| Enzymatic Reactions: | 2,200 | ||
| Transport Reactions: | 530 | ||
| Polypeptides: | 4,466 | ||
| Protein Complexes: | 1,164 | ||
| Enzymes: | 1,713 | ||
| Transporters: | 480 | ||
| Compounds: | 2,962 | ||
| Transcription Units: | 3,696 | ||
| tRNAs: | 89 | ||
| Growth Media: | 438 | ||
| Transcriptional Regulation: | 5,601 | ||
| Protein Features: | 41,336 | ||
| Phenotype Microarray Datasets: | 5 | ||
| GO Terms: | 69,825 | ||
| Gene Essentiality Datasets: | 6 |
Genetic Code Number:
11 — Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
PGDB Unique ID:
0
Copyright SRI International 1999-2022, Marine Biological Laboratory 1998-2001, DoubleTwist Inc 1998-1999. All Rights Reserved.
References
Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Frontiers in Microbiology 2021
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