Table 2 | Bioinformatics Strategies for the Analysis of Lipids

Systems information PATHWAY Pathway maps (16 reference pathway maps, including a lipid structure map for unsaturated fatty acids; classified in “Lipid Metabolism”) 93,644 BRITE Functional hierarchies (“Lipid Metabolism” in pathway and KEGG Orthology classification, and “Lipids” classification based on LIPIDMAPS) 15,687 MODULE Pathway modules (80 modules are defined for pathways in “Lipid Metabolism”) 669 DISEASE Diseases 78 Genomic information ORTHOLOGY KEGG Orthology (KO) groups (orthology groups for enzymes in “Lipid Metabolism”) 11,094 GENOME Organisms in KEGG 876 GENES Genes in high-quality genomes with manual annotation (genes annotated via KO groups for lipid metabolism) 3,445,423 DGENES Genes in draft genomes with automatic annotation 454,577 EGENES Genes as EST contigs with automatic annotation 2,222,350 VGENOME Viral genomes in KEGG 3,167 VGENES Genes in viral genomes 65,289 OGENES Genes in organelle genomes 74,252 SSDB Sequence similarities with best hit relations   Chemical information COMPOUND Metabolites and other chemical compounds (“Lipids” classified in BRITE hierarchy)b

15,179 DRUG Drugs 7,516 GLYCAN Glycans 10,966 ENZYME Enzymes 5,010 REACTION Enzymatic and other reactions in metabolisms 7,647 RPAIR Reactant pairs and chemical transformation 9,906

Read more here: Source link