Bioconductor – cqn (development version)

DOI: 10.18129/B9.bioc.cqn  

 

This is the development version of cqn; for the stable release version, see
cqn.

Conditional quantile normalization

Bioconductor version: Development (3.16)

A normalization tool for RNA-Seq data, implementing the conditional quantile normalization method.

Author: Jean (Zhijin) Wu, Kasper Daniel Hansen

Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>

Citation (from within R,
enter citation("cqn")):

Installation

To install this package, start R (version
“4.2”) and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("cqn")

For older versions of R, please refer to the appropriate
Bioconductor release.

Documentation

To view documentation for the version of this package installed
in your system, start R and enter:

browseVignettes("cqn")

 

PDF

R Script

CQN (Conditional Quantile Normalization)
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, ImmunoOncology, Preprocessing, RNASeq, Software
Version 1.43.0
In Bioconductor since BioC 2.9 (R-2.14) (11 years)
License Artistic-2.0
Depends R (>= 2.10.0), mclust, nor1mix, stats, preprocessCore, splines, quantreg
Imports splines
LinkingTo
Suggests scales, edgeR
SystemRequirements
Enhances
URL
Depends On Me KnowSeq
Imports Me tweeDEseq
Suggests Me
Links To Me
Build Report  

Package Archives

Follow
Installation
instructions to use this
package in your R session.


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