DOI: 10.18129/B9.bioc.cqn
This is the development version of cqn; for the stable release version, see
cqn.
Conditional quantile normalization
Bioconductor version: Development (3.16)
A normalization tool for RNA-Seq data, implementing the conditional quantile normalization method.
Author: Jean (Zhijin) Wu, Kasper Daniel Hansen
Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
Citation (from within R,
enter citation("cqn")
):
Installation
To install this package, start R (version
“4.2”) and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("cqn")
For older versions of R, please refer to the appropriate
Bioconductor release.
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("cqn")
CQN (Conditional Quantile Normalization) | ||
Reference Manual | ||
Text | NEWS |
Details
biocViews | DifferentialExpression, ImmunoOncology, Preprocessing, RNASeq, Software |
Version | 1.43.0 |
In Bioconductor since | BioC 2.9 (R-2.14) (11 years) |
License | Artistic-2.0 |
Depends | R (>= 2.10.0), mclust, nor1mix, stats, preprocessCore, splines, quantreg |
Imports | splines |
LinkingTo | |
Suggests | scales, edgeR |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | KnowSeq |
Imports Me | tweeDEseq |
Suggests Me | |
Links To Me | |
Build Report |
Package Archives
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Installation instructions to use this
package in your R session.
Read more here: Source link