Run fastqc reports for each of the fastq files in:

Run fastqc reports for each of the fastq files in:

/data/CompRes/seq_platform_data/

To run the fastqc reports, you can write a script that will execute the following command (edited for you) for each file:

fastqc /data/CompRes/seq_platform_data/<inputfastq> -o /home/ASURITE/BIO439/module4/

Then transfer the html files to your local computer and view them, so that you can view them, and answer the following:

Determine how many records/reads/sequences are in each file.

There are ___ records/reads/sequences in illumina.fq
There are ___ records/reads/sequences in iontorrent.fq
There are ___ records/reads/sequences in minion.fq
There are ___ records/reads/sequences in pacbio.fq

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