Bioconductor – SNPlocs.Hsapiens.dbSNP155.GRCh37 (development version)

DOI: 10.18129/B9.bioc.SNPlocs.Hsapiens.dbSNP155.GRCh37  

 

This is the development version of SNPlocs.Hsapiens.dbSNP155.GRCh37; to use it, please install the devel version of Bioconductor.

Human SNP locations and alleles extracted from dbSNP Build 155 and placed on the GRCh37/hg19 assembly

Bioconductor version: Development (3.16)

The 929,496,192 SNPs in this package were extracted from the RefSNP JSON files for chromosomes 1-22, X, Y, and MT, located at ftp.ncbi.nih.gov/snp/archive/b155/JSON/ (these files were created by NCBI in May 2021). These SNPs can be “injected” in BSgenome.Hsapiens.UCSC.hg19.

Author: Hervé Pagès

Maintainer: Hervé Pagès <hpages.on.github at gmail.com>

Citation (from within R,
enter citation("SNPlocs.Hsapiens.dbSNP155.GRCh37")):

Installation

To install this package, start R (version
“4.2”) and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SNPlocs.Hsapiens.dbSNP155.GRCh37")

For older versions of R, please refer to the appropriate
Bioconductor release.

Documentation

Details

biocViews AnnotationData, Genetics, Homo_sapiens, SNPlocs
Version 0.99.22
License Artistic-2.0
Depends R (>= 4.2.0), BSgenome
Imports methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
LinkingTo
Suggests Biostrings, BSgenome.Hsapiens.UCSC.hg19
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me MungeSumstats
Links To Me

Package Archives

Follow
Installation
instructions to use this
package in your R session.


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