Bioconductor – RTCGA.clinical

DOI: 10.18129/B9.bioc.RTCGA.clinical  

 

This package is for version 3.8 of Bioconductor;
for the stable, up-to-date release version, see
RTCGA.clinical.

Clinical datasets from The Cancer Genome Atlas Project

Bioconductor version: 3.8

Package provides clinical datasets from The Cancer Genome Atlas Project for all cohorts types from gdac.broadinstitute.org/. Clinical data format is explained here wiki.nci.nih.gov/display/TCGA/Clinical+Data+Overview. Data from 2015-11-01 snapshot.

Author: Marcin Kosinski <m.p.kosinski at gmail.com>

Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>

Citation (from within R,
enter citation("RTCGA.clinical")):

Installation

To install this package, start R (version
“3.5”) and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("RTCGA.clinical")

For older versions of R, please refer to the appropriate
Bioconductor release.

Documentation

To view documentation for the version of this package installed
in your system, start R and enter:

browseVignettes("RTCGA.clinical")

 

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R Script

Using RTCGA to download clinical data as included in RTCGA.clinical
PDF   Reference Manual
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